Merge branch 'main' of github.com:qwjyh/dotfiles

merging nix flake

README.md

@@ -7,16 +7,18 @@ my dotfiles
   - AHK macro
   - wezterm
   - etc
-- Ubuntu 20.04 on WSL
-  - fish
-- Arch/Manjaro
+- Arch
   - fish
   - tmux
   - neovim
   - keyboard config(xremap)
   - wezterm
+- Ubuntu 22.04 on WSL
+  - fish
+- Termux
 
 ## extra
+- qpdfview
 - okular
 
 # Installing
@@ -29,11 +31,20 @@ my dotfiles
 6. run `bin/install.ps1`
 
 ### note
-* manual install lean
+* manually install lean
 
 ## Linux
-1. install fish
-2. run install.sh
+1. run install.sh
+
+# Neovim
+
+## Julia
+### Initial setup
+- `./bin/neovim/setup_julials.jl` to set up environment with LanguageServer.jl
+<!-- - Edit `init.lua` not to use sysimage and edit some julia code -->
+- `./bin/neovim/update_julials.jl` to generate sysimage for faster startup time
+
+Edit `init.lua` to change arguments for julials.
 
 # TODO
 - Iron.nvim doesn't work for julia on Windows

bin/install.ps1

@@ -54,16 +54,22 @@ scoop import .\bin\windows\scoop_apps\scoop_minimal_apps.json
 New-Item -ItemType SymbolicLink -Path ~\AppData\Local\nvim\init.lua -Target (Resolve-Path .\dotfiles\neovim\init.lua) -Force
 New-Item -ItemType SymbolicLink -Path ~\AppData\Local\nvim\lua\lualine_setup.lua -Target (Resolve-Path .\dotfiles\neovim\lua\lualine_setup.lua) -Force
 New-Item -ItemType SymbolicLink -Path ~\AppData\Local\nvim\lua\term_powershell.lua -Target (Resolve-Path .\dotfiles\neovim\lua\term_powershell.lua) -Force
+New-Item -ItemType SymbolicLink -Path ~\AppData\Local\nvim\lua\lsp_config.lua -Target (Resolve-Path .\dotfiles\neovim\lua\lsp_config.lua) -Force
+New-Item -ItemType SymbolicLink -Path ~\AppData\Local\nvim\lua\local_settings.lua -Target (Resolve-Path .\dotfiles\neovim\lua\local_settings.lua) -Force
 New-Item -ItemType SymbolicLink -Path ~\AppData\Local\nvim\lua\lspconfig\server_configurations\satysfi_ls.lua -Target (Resolve-Path .\dotfiles\neovim\lua\lspconfig\server_configurations\satysfi_ls.lua) -Force
+New-Item -ItemType SymbolicLink -Path ~\AppData\Local\nvim\lua\lspconfig\server_configurations\jetls.lua -Target (Resolve-Path .\dotfiles\neovim\lua\lspconfig\server_configurations\jetls.lua) -Force
 mkdir $env:LOCALAPPDATA\nvim\after\ftplugin
 New-Item -ItemType SymbolicLink -Path $env:LOCALAPPDATA\nvim\after\ftplugin\satysfi.lua -Target (Resolve-Path .\dotfiles\neovim\after\ftplugin\satysfi.lua)
 New-Item -ItemType SymbolicLink -Path $env:LOCALAPPDATA\nvim\after\ftplugin\tex.lua -Target (Resolve-Path .\dotfiles\neovim\after\ftplugin\tex.lua)
+New-Item -ItemType SymbolicLink -Path $env:LOCALAPPDATA\nvim\after\ftplugin\typst.lua -Target (Resolve-Path .\dotfiles\neovim\after\ftplugin\typst.lua)
+New-Item -ItemType SymbolicLink -Path $env:LOCALAPPDATA\nvim\after\ftplugin\org.lua -Target (Resolve-Path .\dotfiles\neovim\after\ftplugin\org.lua)
 mkdir $env:LOCALAPPDATA\nvim\after\queries\satysfi
 Invoke-WebRequest -Uri "https://raw.githubusercontent.com/monaqa/tree-sitter-satysfi/master/queries/highlights.scm" -OutFile $env:LOCALAPPDATA\nvim\after\queries\satysfi\highlights.scm
 Invoke-WebRequest -Uri "https://raw.githubusercontent.com/monaqa/tree-sitter-satysfi/master/queries/indents.scm" -OutFile $env:LOCALAPPDATA\nvim\after\queries\satysfi\indents.scm
 Invoke-WebRequest -Uri "https://raw.githubusercontent.com/monaqa/tree-sitter-satysfi/master/queries/matchup.scm" -OutFile $env:LOCALAPPDATA\nvim\after\queries\satysfi\matchup.scm
 mkdir $env:LOCALAPPDATA\nvim\after\queries\julia
 New-Item -ItemType SymbolicLink -Path $env:LOCALAPPDATA\nvim\after\queries\julia\injections.scm -Target (Resolve-Path .\dotfiles\neovim\after\queries\julia\injections.scm)
+
 # pwsh
 New-Item -ItemType SymbolicLink -Path $PROFILE -Target (Resolve-Path .\dotfiles\pwsh\powershell_profile.ps1) -Force
 New-Item -ItemType SymbolicLink -Path ~\.config\powershell\chezmoi_completion.ps1 -Target (Resolve-Path .\dotfiles\pwsh\chezmoi_completion.ps1) -Force
@@ -76,4 +82,7 @@ New-Item -ItemType SymbolicLink -Path ~\.config\wezterm\wezterm.lua -Target (Res
 # julia
 mkdir ~\.config\julia\config
 New-Item -ItemType SymbolicLink -Path ~\.julia\config\startup.jl -Target (Resolve-Path .\dotfiles\startup_windows.jl) -Force
+# lf
+mkdir $env:LOCALAPPDATA\lf
+New-Item -ItemType SymbolicLink -Path $env:LOCALAPPDATA\lf\lfrc -Target (Resolve-Path .\dotfiles\lf\lfrc) -Force
 

bin/install.sh

@@ -10,37 +10,49 @@ set -eu
 # 	exit 1
 # fi
 # TODO: check git in path
-cd $(git rev-parse --show-toplevel)
+cd "$(git rev-parse --show-toplevel)"
 
 # =========================================================
 # links
 # =========================================================
 mkdir -p ~/.config/fish
-ln -sf $(pwd)/dotfiles/fish/config.fish ~/.config/fish/config.fish
-ln -sf $(pwd)/dotfiles/starship/starship.toml ~/.config/starship.toml
-ln -sf $(pwd)/dotfiles/tmux.conf ~/.tmux.conf
+ln -sf "$(pwd)/dotfiles/fish/config.fish" ~/.config/fish/config.fish
+ln -sf "$(pwd)/dotfiles/starship/starship.toml" ~/.config/starship.toml
+ln -sf "$(pwd)/dotfiles/tmux.conf" ~/.tmux.conf
 
+# ln -s $(pwd)/dotfiles/neovim ~/.config/nvim
 mkdir -p ~/.config/nvim
-ln -sf $(pwd)/dotfiles/neovim/init.lua ~/.config/nvim/init.lua
+ln -sf "$(pwd)/dotfiles/neovim/init.lua" ~/.config/nvim/init.lua
 mkdir -p ~/.config/nvim/lua
-ln -sf $(pwd)/dotfiles/neovim/lua/lualine_setup.lua ~/.config/nvim/lua/lualine_setup.lua
-ln -sf $(pwd)/dotfiles/neovim/lua/term_powershell.lua ~/.config/nvim/lua/term_powershell.lua
-ln -sf $(pwd)/dotfiles/neovim/lua/pluto_nvim.lua ~/.config/nvim/lua/pluto_nvim.lua
+ln -sf "$(pwd)/dotfiles/neovim/lua/lualine_setup.lua" ~/.config/nvim/lua/lualine_setup.lua
+ln -sf "$(pwd)/dotfiles/neovim/lua/term_powershell.lua" ~/.config/nvim/lua/term_powershell.lua
+ln -sf "$(pwd)/dotfiles/neovim/lua/lsp_config.lua" ~/.config/nvim/lua/lsp_config.lua
+ln -sf "$(pwd)/dotfiles/neovim/lua/pluto_nvim.lua" ~/.config/nvim/lua/pluto_nvim.lua
+ln -sf "$(pwd)/dotfiles/neovim/lua/local_settings.lua" ~/.config/nvim/lua/local_settings.lua
 mkdir -p ~/.config/nvim/lua/lspconfig/server_configurations
-ln -sf $(pwd)/dotfiles/neovim/lua/lspconfig/server_configurations/satysfi_ls.lua ~/.config/nvim/lua/lspconfig/server_configurations/satysfi_ls.lua
+ln -sf "$(pwd)/dotfiles/neovim/lua/lspconfig/server_configurations/satysfi_ls.lua" ~/.config/nvim/lua/lspconfig/server_configurations/satysfi_ls.lua
+ln -sf "$(pwd)/dotfiles/neovim/lua/lspconfig/server_configurations/jetls.lua" ~/.config/nvim/lua/lspconfig/server_configurations/jetls.lua
 mkdir -p ~/.config/nvim/after/ftplugin
-ln -sf $(pwd)/dotfiles/neovim/after/ftplugin/satysfi.lua ~/.config/nvim/after/ftplugin/satysfi.lua
-ln -sf $(pwd)/dotfiles/neovim/after/ftplugin/tex.lua ~/.config/nvim/after/ftplugin/tex.lua
+ln -sf "$(pwd)/dotfiles/neovim/after/ftplugin/satysfi.lua" ~/.config/nvim/after/ftplugin/satysfi.lua
+ln -sf "$(pwd)/dotfiles/neovim/after/ftplugin/tex.lua" ~/.config/nvim/after/ftplugin/tex.lua
+ln -sf "$(pwd)/dotfiles/neovim/after/ftplugin/typst.lua" ~/.config/nvim/after/ftplugin/typst.lua
+ln -sf "$(pwd)/dotfiles/neovim/after/ftplugin/org.lua" ~/.config/nvim/after/ftplugin/org.lua
 mkdir -p ~/.config/nvim/after/queries/satysfi
 curl -o ~/.config/nvim/after/queries/satysfi/highlights.scm https://raw.githubusercontent.com/monaqa/tree-sitter-satysfi/master/queries/highlights.scm
 curl -o ~/.config/nvim/after/queries/satysfi/indents.scm https://raw.githubusercontent.com/monaqa/tree-sitter-satysfi/master/queries/indents.scm
 curl -o ~/.config/nvim/after/queries/satysfi/matchup.scm https://raw.githubusercontent.com/monaqa/tree-sitter-satysfi/master/queries/matchup.scm
 mkdir -p ~/.config/nvim/after/queries/julia
-ln -sf $(pwd)/dotfiles/neovim/after/queries/julia/injections.scm ~/.config/nvim/after/queries/julia/injections.scm
+ln -sf "$(pwd)/dotfiles/neovim/after/queries/julia/injections.scm" ~/.config/nvim/after/queries/julia/injections.scm
 mkdir -p ~/.config/nvim/luasnippets
-ln -sf $(pwd)/dotfiles/neovim/luasnippets/all.lua ~/.config/nvim/luasnippets/all.lua
+ln -sf "$(pwd)/dotfiles/neovim/luasnippets/all.lua" ~/.config/nvim/luasnippets/all.lua
 mkdir -p ~/.config/nvim/luasnippets/satysfi
-ln -sf $(pwd)/dotfiles/neovim/luasnippets/satysfi/math.lua ~/.config/nvim/luasnippets/satysfi/math.lua
+ln -sf "$(pwd)/dotfiles/neovim/luasnippets/satysfi/math.lua" ~/.config/nvim/luasnippets/satysfi/math.lua
 
 mkdir -p ~/.julia/config
-ln -sf $(pwd)/dotfiles/startup_linux.jl ~/.julia/config/startup.jl
+ln -sf "$(pwd)/dotfiles/startup_linux.jl" ~/.julia/config/startup.jl
+curl -o ~/.julia/config/catppuccin.jl https://raw.githubusercontent.com/catppuccin/ohmyrepl/refs/heads/main/catppuccin.jl
+
+mkdir -p ~/.config/lf
+ln -sf "$(pwd)/dotfiles/lf/lfrc" ~/.config/lf/lfrc
+
+ln -sf "$(pwd)/dotfiles/bat/config" "$(bat --config-file)"

bin/neovim/add_dependencies.jl

@@ -6,24 +6,26 @@ using Pkg
 # add LanguageServer.jl
 Pkg.add("LanguageServer")
 
-# add dependencies of LanguageServer.jl
-pkg_ls = Pkg.project().dependencies["LanguageServer"]
-pkg_ls_deps = Pkg.dependencies()[pkg_ls].dependencies |> keys
-foreach(Pkg.add, pkg_ls_deps)
+# add PackageCompiler.jl
+Pkg.add("PackageCompiler")
 
 # add extra dependencies
 # these packages are manually collected
-pkg_extra = ["Logging", "Sockets", "DataStructures", "Tar", "ArgTools", "Dates", "Downloads"]
-foreach(Pkg.add, pkg_extra)
-@info "dependency added"
+pkg_extra = ["Logging", "Sockets", "DataStructures", "Tar", "ArgTools", "Dates", "Downloads", "TOML", "JSONRPC", "SymbolServer", "CSTParser", "StaticLint", "JSON"]
+Pkg.add(pkg_extra)
+@info "added dependencies"
+
+# Extra package to be executed in precompiled code
+pkg_precompiled = ["Pkg"]
 
 # save pkgs to be used for precompile functions with traced script
 out_path = joinpath(Pkg.project().path |> dirname, "precompile_exec_head.jl")
 @info "writing $(out_path)"
 open(out_path, "w") do io
     println(io, "using LanguageServer")
-    println(io, "using " * join(pkg_ls_deps, ", "))
     println(io, "using " * join(pkg_extra, ", "))
+    println(io, "using " * join(pkg_precompiled, ", "))
+    println(io, "import FileWatching")
 end
 @info "finished writing precompile head file"
 

bin/neovim/readme.md

@@ -1,27 +1,24 @@
 # How to manage Julia Language Server
-This config use sysimage built with PackageCompiler to make language server startup faster.
-Scripts in this directory is for management of sysimage.
+This config use sysimage built with PackageCompiler to make language server starts faster.
+Scripts in this directory are for management of the sysimage.
 
 # description
 all related process is done in project at `~/.julia/environments/nvim-lspconfig/`.
 
-## startup
+## install (or minor update of Julia)
 ```sh
-$ ./setup_julials.sh
+julia ./setup_julials.jl
 ```
-which executes `add_dependencies.jl` internally.
+Run Language Server with `--tracecompile` option from any editor.
 
 ## update
 ```sh
-$ ./update_julials.sh
+julia ./update_julials.sh
 ```
 which updates project, compile sysimage, then do precompile.
+To use the sysimage, run Language Server with `-J ~/.julia/environments/nvim-lspconfig/` option.
 
 # effect
 Start up got about x3 - x4 faster.
 It still takes some time to load packages though.
 
-# TODO
-- [ ] Not sure all necessary packages are listed in add_dependencies.jl
-- [ ] Maybe it's better to set up different sysimages for each projects
-

bin/neovim/setup_julials.jl

@@ -1,16 +1,12 @@
 #!/usr/bin/julia
 project_path = joinpath(homedir(), ".julia", "environments", "nvim-lspconfig")
 if !ispath(project_path)
-    try
-        mkdir(project_path)
-        @info "Created $(project_path)"
-    catch e
-        @error e
-        @error dump(e)
-        throw(e)
-    end
+    mkdir(project_path)
+    @info "Created $(project_path)"
+    touch(joinpath(project_path, "tracecompile.jl"))
 end
-cmd = `julia --project=$(project_path) $(@__DIR__)/add_dependencies.jl`
-@info cmd
-run(cmd)
+
+using Pkg
+Pkg.activate(project_path)
+include("$(@__DIR__)/add_dependencies.jl")
 

bin/neovim/setup_julials.sh

@@ -1,2 +0,0 @@
-#!/usr/bin/bash -x
-julia --project=~/.julia/environments/nvim-lspconfig ./add_dependencies.jl

bin/neovim/update_julials.jl

@@ -1,14 +1,19 @@
 #!/usr/bin/julia
 project_path = joinpath(homedir(), ".julia", "environments", "nvim-lspconfig")
-cd(project_path)
-@info "now at " pwd()
-run(`julia --project=. -e 'using Pkg; Pkg.update()'`)
-compile_traces = Iterators.filter(eachline("tracecompile.jl")) do line
-    !startswith(line, '#') && !occursin(r"\#\d+\#\d+", line)
-end |> join
-read("precompile_exec_head.jl", String) * compile_traces |> (b -> write("precompile_exec.jl", b))
-@info "compiling sysimage..."
-run(`julia --project=. -e 'using PackageCompiler; create_sysimage(["LanguageServer"], sysimage_path = "sys-ls.so", precompile_execution_file = ["precompile_exec.jl"])'`)
-@info "post precompile"
-run(`julia --project=. -J sys-ls.so -e 'using Pkg; Pkg.precompile()'`)
+using Pkg
+using PackageCompiler;
+cd(project_path) do
+    @info "now at " pwd()
+    Pkg.activate(".")
+    Pkg.update()
+    compile_traces = Iterators.filter(eachline("tracecompile.jl")) do line
+        # Remove anonymous functions from compile trace
+        !startswith(line, '#') && !occursin(r"\#\d+\#\d+", line) && !occursin(r"\#\#printstyled\#", line)
+    end |> join
+    read("precompile_exec_head.jl", String) * compile_traces |> (b -> write("precompile_exec.jl", b))
+    @info "compiling sysimage..."
+    create_sysimage(["LanguageServer"], sysimage_path = "sys-ls.so", precompile_execution_file = ["precompile_exec.jl"])
+    @info "post precompile"
+    run(`julia --project=. -J sys-ls.so -e 'using Pkg; Pkg.precompile()'`)
+end
 

bin/neovim/update_julials.sh

@@ -1,7 +0,0 @@
-#!/usr/bin/bash -x
-cd ~/.julia/environments/nvim-lspconfig/ || return 1
-julia --project=. -e 'using Pkg; Pkg.update()'
-cat precompile_exec_head.jl tracecompile.jl > precompile_exec.jl
-julia --project=. -e 'using PackageCompiler; create_sysimage(["LanguageServer"], sysimage_path="sys-ls.so", precompile_execution_file=["precompile_exec.jl"])'
-julia --project=. -J sys-ls.so -e 'using Pkg; Pkg.precompile()'
-

dotfiles/bat/config

@@ -0,0 +1,4 @@
+# use Catppuccin for bat
+# https://github.com/catppuccin/bat
+# Installation instruction on the readme
+--theme="Catppuccin Mocha"

dotfiles/fish/config.fish

@@ -18,11 +18,31 @@ if status is-interactive
     # abbr (from 3.6, --universal is removed)
     abbr -a -- l less
     abbr -a -- ll 'eza -la --icons --git'
+    abbr -a -- qpv 'qpdfview --unique'
 
     zoxide init fish | source
 
     # opam
     #source ~/.opam/opam-init/init.fish > /dev/null 2> /dev/null; or true
+
+    function rga-fzf
+        set RG_PREFIX 'rga --files-with-matches'
+        if test (count $argv) -gt 1
+            set RG_PREFIX "$RG_PREFIX $argv[1..-2]"
+        end
+        set -l file $file
+        set file (
+            FZF_DEFAULT_COMMAND="$RG_PREFIX '$argv[-1]'" \
+            fzf --sort \
+                --preview='test ! -z {} && \
+                    rga --pretty --context 5 {q} {}' \
+                --phony -q "$argv[-1]" \
+                --bind "change:reload:$RG_PREFIX {q}" \
+                --preview-window='50%:wrap'
+        ) && \
+        echo "opening $file" && \
+        open "$file"
+    end
 end
 
 # starship

dotfiles/lf/lfrc

@@ -0,0 +1,23 @@
+cmap <tab> cmd-menu-complete
+cmap <backtab> cmd-menu-complete-back
+
+## https://github.com/gokcehan/lf/wiki/Integrations#eza
+#cmd on-select &{{
+#    lf -remote "send $id set statfmt \"$(eza -ld --color=always "$f" | sed 's/\\/\\\\/g;s/"/\\"/g')\""
+#}}
+#
+#cmd git_branch ${{
+#    git branch | fzf | xargs git checkout
+#    pwd_shell="$(pwd | sed 's/\\/\\\\/g;s/"/\\"/g')"
+#    lf -remote "send $id updir; cd \"$pwd_shell\""
+#}}
+#map gb :git_branch
+#map gp $clear; git pull --rebase || true; echo "press ENTER"; read ENTER
+#map gs $clear; git status; echo "press ENTER"; read ENTER
+#map gl $clear; git log --graph --pretty=format:'%Cred%h%Creset -%C(yellow)%d%Creset %s %Cgreen(%cr) %C(bold blue)<%an>%Creset' --abbrev-commit
+#
+#cmd on-cd &{{
+#    fmt="$(STARSHIP_SHELL= starship prompt | sed 's/\\/\\\\/g;s/"/\\"/g')"
+#    lf -remote "send $id set promptfmt \"$fmt\""
+#}}
+

dotfiles/neovim/.gitignore

@@ -0,0 +1 @@
+lua/local_settings.lua

dotfiles/neovim/after/ftplugin/org.lua

@@ -0,0 +1,2 @@
+vim.o.tabstop = 2
+vim.o.shiftwidth = 2

dotfiles/neovim/after/queries/julia/injections.scm

@@ -1,7 +1,7 @@
 ;; extends
 
-((prefixed_string_literal
-  prefix: (identifier) @_prefix) @injection.content
-  (#eq? @_prefix "md")
-  (#set! injection.language "markdown")
-  (#offset! @injection.content 0 2 0 -1))
+(prefixed_string_literal
+  prefix: (identifier) @_prefix
+  (content) @injection.content
+  (#eq? @_prefix "sql")
+  (#set! injection.language "sql"))

dotfiles/neovim/init.lua

@@ -1,7 +1,7 @@
 -----------------------------------------------------------
 -- Installing plugin manager 'lazy.nvim'
 local lazypath = vim.fn.stdpath("data") .. "/lazy/lazy.nvim"
-if not vim.loop.fs_stat(lazypath) then
+if not (vim.uv or vim.loop).fs_stat(lazypath) then
     vim.fn.system({
         "git",
         "clone",
@@ -28,16 +28,6 @@ require('lazy').setup({
             }
         end
     },
-    {
-        dir = "./lua/pluto_nvim.lua",
-        config = function()
-            -- temp global for dev
-            pluto_nvim = require("pluto_nvim")
-            require("pluto_nvim").setup {}
-        end,
-        lazy = true,
-        ft = { 'julia' },
-    },
     {
         'folke/which-key.nvim',
         config = function()
@@ -66,7 +56,21 @@ require('lazy').setup({
     },
     { -- lualine(statusline)
         'nvim-lualine/lualine.nvim',
-        dependencies = { 'kyazdani42/nvim-web-devicons', lazy = true }
+        dependencies = { 'nvim-tree/nvim-web-devicons', lazy = true }
+    },
+    {
+        'shellRaining/hlchunk.nvim',
+        event = { "BufReadPre", "BufNewFile" },
+        config = function()
+            require('hlchunk').setup {
+                chunk = {
+                    enable = true,
+                },
+                line_num = {
+                    enable = true,
+                },
+            }
+        end
     },
     {
         'lervag/vimtex',
@@ -110,6 +114,9 @@ require('lazy').setup({
         build = ":TSUpdate",
         dependencies = {
             "nvim-treesitter/nvim-treesitter-textobjects",
+            {
+                "nvim-treesitter/nvim-treesitter-context"
+            }
         },
     },
     {
@@ -118,14 +125,6 @@ require('lazy').setup({
     },
     {
         "andymass/vim-matchup",
-        config = function()
-            vim.g.matchup_matchparen_offscreen = { method = "popup" }
-            require 'nvim-treesitter.configs'.setup {
-                matchup = {
-                    enable = true,
-                }
-            }
-        end,
     },
     {
         'nvim-telescope/telescope.nvim',
@@ -141,7 +140,40 @@ require('lazy').setup({
     },
     {
         'folke/trouble.nvim',
-        -- config = function
+        opts = {},
+        cmd = "Trouble",
+        keys = {
+            {
+                "<space>xx",
+                "<cmd>Trouble diagnostics toggle<cr>",
+                desc = "Diagnostics (Trouble)",
+            },
+            {
+                "<space>xX",
+                "<cmd>Trouble diagnostics toggle filter.buf=0<cr>",
+                desc = "Buffer Diagnostics (Trouble)",
+            },
+            {
+                "<space>cs",
+                "<cmd>Trouble symbols toggle focus=false<cr>",
+                desc = "Symbols (Trouble)",
+            },
+            {
+                "<space>cl",
+                "<cmd>Trouble lsp toggle focus=false win.position=bottom<cr>",
+                desc = "LSP Definitions / references / ... (Trouble)",
+            },
+            {
+                "<space>xL",
+                "<cmd>Trouble loclist toggle<cr>",
+                desc = "Location List (Trouble)",
+            },
+            {
+                "<space>xQ",
+                "<cmd>Trouble qflist toggle<cr>",
+                desc = "Quickfix List (Trouble)",
+            },
+        },
     },
     {
         'Julian/lean.nvim',
@@ -156,29 +188,7 @@ require('lazy').setup({
         -- see Julian/lean.nvim readme
         opts = {
             lsp = {
-                on_attach = function(client, bufnr)
-                    -- Enable completion triggered by <c-x><c-o>
-                    --vim.api.nvim_buf_set_option(bufnr, 'omnifunc', 'v:lua.vim.lsp.omnifunc')
-
-                    -- Mappings
-                    -- See `:help vim.lsp.*` for documentation on any of the below function
-                    local bufopts = { noremap = true, silent = true, buffer = bufnr }
-                    vim.keymap.set('n', 'gD', vim.lsp.buf.declaration, bufopts)
-                    vim.keymap.set('n', 'gd', vim.lsp.buf.definition, bufopts)
-                    vim.keymap.set('n', 'K', vim.lsp.buf.hover, bufopts)
-                    vim.keymap.set('n', 'g1', vim.lsp.buf.implementation, bufopts)
-                    vim.keymap.set('n', '<C-k>', vim.lsp.buf.signature_help, bufopts)
-                    vim.keymap.set('n', '<space>wa', vim.lsp.buf.add_workspace_folder, bufopts)
-                    vim.keymap.set('n', '<space>wr', vim.lsp.buf.remove_workspace_folder, bufopts)
-                    vim.keymap.set('n', '<space>wl', function()
-                        print(vim.inspect(vim.lsp.buf.list_workspace_folders()))
-                    end, bufopts)
-                    vim.keymap.set('n', '<space>D', vim.lsp.buf.type_definition, bufopts)
-                    vim.keymap.set('n', '<space>rn', vim.lsp.buf.rename, bufopts)
-                    vim.keymap.set('n', '<space>ca', vim.lsp.buf.code_action, bufopts)
-                    vim.keymap.set('n', 'grf', vim.lsp.buf.references, bufopts)
-                    vim.keymap.set('n', '<space>f', function() vim.lsp.buf.format { async = true } end, bufopts)
-                end,
+                on_attach = require("lsp_config").on_attach,
             },
             mappings = true,
         },
@@ -194,22 +204,105 @@ require('lazy').setup({
         },
         -- event = 'VeryLazy', -- doesn't work with existing comp and treesitter
         config = function()
-            -- Setup treesitter
-            require('nvim-treesitter.configs').setup({
-                highlight = {
-                    enable = true,
-                    additional_vim_regex_highlighting = { 'org' },
-                },
-                ensure_installed = { 'org' },
-            })
-
             -- Setup orgmode
             require('orgmode').setup({
-                org_agenda_files = '~/orgfiles/**/*',
+                org_agenda_files = require("local_settings").org_agenda_files,
                 org_default_notes_file = '~/orgfiles/refile.org',
+                org_todo_keywords = {
+                    "TODO(t)",
+                    "PLAN(p)",
+                    "NEXT(n)",
+                    "|",
+                    "DONE(d)",
+                    "CANCELED(c)",
+                },
+                org_todo_keyword_faces = {
+                    -- TODO = ":foreground red",
+                    PLAN = ":foreground #F0BB61",
+                    NEXT = ":background #663333 :foreground #E0A0A0",
+                    CANCELED = ":foreground #99AA99",
+                },
+                org_archive_location = '~/orgfiles/archives/%s_archive::',
+                org_adapt_indentation = false,
+                org_id_link_to_org_use_id = true,
+                org_capture_templates = {
+                    t = {
+                        description = "Task",
+                        template = '* TODO %?\n%u'
+                    },
+                    l = {
+                        description = "Log",
+                        template = '* %?\n%U'
+                    },
+                    j = {
+                        description = "Journal",
+                        template = '* %?\n%U',
+                        target = '~/orgfiles/journal.org',
+                    },
+                },
             })
         end,
     },
+    {
+        'chomosuke/typst-preview.nvim',
+        ft = 'typst',
+        version = 'v1.*',
+        build = function()
+            require 'typst-preview'.update()
+        end,
+        config = function()
+            require 'typst-preview'.setup {
+                -- Setting this true will enable logging debug information to
+                -- `vim.fn.stdpath 'data' .. '/typst-preview/log.txt'`
+                debug = true,
+
+                -- Custom format string to open the output link provided with %s
+                -- Example: open_cmd = 'firefox %s -P typst-preview --class typst-preview'
+                open_cmd = nil,
+
+                -- Setting this to 'always' will invert black and white in the preview
+                -- Setting this to 'auto' will invert depending if the browser has enable
+                -- dark mode
+                -- Setting this to '{"rest": "<option>","image": "<option>"}' will apply
+                -- your choice of color inversion to images and everything else
+                -- separately.
+                invert_colors = 'never',
+
+                -- Whether the preview will follow the cursor in the source file
+                follow_cursor = true,
+
+                -- Provide the path to binaries for dependencies.
+                -- Setting this will skip the download of the binary by the plugin.
+                -- Warning: Be aware that your version might be older than the one
+                -- required.
+                dependencies_bin = {
+                    ['tinymist'] = 'tinymist',
+                    ['websocat'] = nil,
+                },
+
+                -- A list of extra arguments (or nil) to be passed to previewer.
+                -- For example, extra_args = { "--input=ver=draft", "--ignore-system-fonts" }
+                extra_args = nil,
+
+                -- This function will be called to determine the root of the typst project
+                get_root = function(path_of_main_file)
+                    -- Use root of git repository as a --root for typst
+                    local rootpath = vim.fs.root(path_of_main_file, '.git')
+                    if rootpath then
+                        return rootpath
+                    else
+                        return vim.fn.fnamemodify(path_of_main_file, ':p:h')
+                    end
+                end,
+
+                -- This function will be called to determine the main file of the typst
+                -- project.
+                get_main_file = function(path_of_buffer)
+                    return path_of_buffer
+                end,
+            }
+        end
+    },
 })
 
 -----------------------------------------------------------
@@ -253,6 +346,7 @@ vim.o.errorbells = true
 vim.opt.undofile = true                -- Save undo history
 vim.o.completeopt = 'menuone,noselect' -- for better completion experience
 vim.o.termguicolors = true
+vim.o.exrc = true
 
 vim.keymap.set('n', 'H', '<cmd>tabp<cr>', { desc = 'tab previous' })
 vim.keymap.set('n', 'L', '<cmd>tabn<cr>', { desc = 'tab next' })
@@ -261,11 +355,39 @@ vim.keymap.set('n', 'L', '<cmd>tabn<cr>', { desc = 'tab next' })
 require('catppuccin').setup({
     transparent_background = true,
 })
-vim.cmd.colorscheme "catppuccin"
+vim.cmd.colorscheme "catppuccin-mocha"
+-- vim.cmd.colorscheme "catppuccin-latte"
 
 -----------------------------------------------------------
 vim.g.mapleader = ' '
 vim.g.maplocalleader = ' '
+local virt_lines_ns = vim.api.nvim_create_namespace 'on_diagnostic_jump'
+--- @param diagnostic? vim.Diagnostic
+--- @param bufnr integer
+local function on_jump(diagnostic, bufnr)
+    if not diagnostic then return end
+    vim.diagnostic.show(
+        virt_lines_ns,
+        bufnr,
+        { diagnostic },
+        { virtual_lines = { current_line = true }, virtual_text = false }
+    )
+end
+-- vim.diagnostic.config({
+--     jump = { on_jump = on_jump },
+-- })
+vim.keymap.set('n', ']d', function()
+    vim.diagnostic.jump({
+        count = 1,
+        float = true,
+    })
+end)
+vim.keymap.set('n', '[d', function()
+    vim.diagnostic.jump({
+        count = -1,
+        float = true,
+    })
+end)
 -- some terminalmode settings
 vim.keymap.set('t', '<C-w>h', '<C-\\><C-N><C-w>h',
     { noremap = true, desc = "Exit terminal-mode and move to left window." })
@@ -331,7 +453,7 @@ require('gitsigns').setup {
         ---@param mode string|string[]
         ---@param l string
         ---@param r any
-        ---@param opts table?
+        ---@param opts vim.keymap.set.Opts?
         local function map(mode, l, r, opts)
             opts = opts or {}
             opts.buffer = bufnr
@@ -362,7 +484,12 @@ local builtin = require('telescope.builtin')
 vim.keymap.set('n', '<leader>ff', function() builtin.find_files { sort_lastused = true } end, { desc = "find files" })
 vim.keymap.set('n', '<leader>fw', builtin.lsp_workspace_symbols, { desc = "lsp workspace symbols" })
 vim.keymap.set('n', '<leader>fd', builtin.lsp_document_symbols, { desc = "lsp document symbols" })
+vim.keymap.set('n', '<leader>flr', builtin.lsp_references, { desc = "lsp references for word" })
+vim.keymap.set('n', '<leader>fli', builtin.lsp_incoming_calls, { desc = "lsp incoming calls" })
+vim.keymap.set('n', '<leader>flo', builtin.lsp_outgoing_calls, { desc = "lsp outgoing calls" })
+vim.keymap.set('n', '<leader>fll', builtin.lsp_implementations, { desc = "lsp implementations" })
 vim.keymap.set('n', '<leader>fb', builtin.buffers, { desc = "buffers" })
+vim.keymap.set('n', '<leader>fz', builtin.current_buffer_fuzzy_find, { desc = "current buffer fuzzy find" })
 vim.keymap.set('n', '<leader>fg', builtin.live_grep, { desc = "grep" })
 vim.keymap.set('n', '<leader>fh', builtin.help_tags, { desc = "help tags" })
 vim.keymap.set('n', '<leader>fc', builtin.git_commits, { desc = "git commit" })
@@ -484,35 +611,11 @@ local lspconfig = require 'lspconfig'
 -- See `:help vim.diagnostic.* for documentation on any of the below functions
 local opts = { noremap = true, silent = true }
 vim.keymap.set('n', '<space>e', vim.diagnostic.open_float, opts)
-vim.keymap.set('n', '[d', vim.diagnostic.goto_prev, opts)
-vim.keymap.set('n', ']d', vim.diagnostic.goto_next, opts)
 vim.keymap.set('n', '<space>q', vim.diagnostic.setloclist, opts)
 
 -- Use an on_attach function to only map the following keys
 -- after the language server attaches to the current buffer
-local on_attach = function(client, bufnr)
-    -- Enable completion triggered by <c-x><c-o>
-    --vim.api.nvim_buf_set_option(bufnr, 'omnifunc', 'v:lua.vim.lsp.omnifunc')
-
-    -- Mappings
-    -- See `:help vim.lsp.*` for documentation on any of the below function
-    local bufopts = { noremap = true, silent = true, buffer = bufnr }
-    vim.keymap.set('n', 'gD', vim.lsp.buf.declaration, bufopts)
-    vim.keymap.set('n', 'gd', vim.lsp.buf.definition, bufopts)
-    vim.keymap.set('n', 'K', vim.lsp.buf.hover, bufopts)
-    vim.keymap.set('n', 'g1', vim.lsp.buf.implementation, bufopts)
-    vim.keymap.set('n', '<C-k>', vim.lsp.buf.signature_help, bufopts)
-    vim.keymap.set('n', '<space>wa', vim.lsp.buf.add_workspace_folder, bufopts)
-    vim.keymap.set('n', '<space>wr', vim.lsp.buf.remove_workspace_folder, bufopts)
-    vim.keymap.set('n', '<space>wl', function()
-        print(vim.inspect(vim.lsp.buf.list_workspace_folders()))
-    end, bufopts)
-    vim.keymap.set('n', '<space>D', vim.lsp.buf.type_definition, bufopts)
-    vim.keymap.set('n', '<space>rn', vim.lsp.buf.rename, bufopts)
-    vim.keymap.set('n', '<space>ca', vim.lsp.buf.code_action, bufopts)
-    vim.keymap.set('n', 'grf', vim.lsp.buf.references, bufopts)
-    vim.keymap.set('n', '<space>f', function() vim.lsp.buf.format { async = true } end, bufopts)
-end
+local on_attach = require("lsp_config").on_attach
 
 -- cmp_nvim_lsp supports additional LSP completion capabilities
 local capabilities = require("cmp_nvim_lsp").default_capabilities()
@@ -553,13 +656,17 @@ if julials_so_file then -- if sysimage doesn't exist, julials_so_file == nil
 end
 -- main
 lspconfig.julials.setup {
-    on_attach = on_attach,
+    on_attach = function(client, bufnr)
+        on_attach(client, bufnr)
+        vim.lsp.inlay_hint.enable(true, { bufnr = bufnr })
+    end,
     capabilities = capabilities,
     cmd = { "julia", "--startup-file=no", "--history-file=no",
         julials_so_option[1], julials_so_option[2],
         -- use below 2 lines to collect script to be included in sysimage
-        -- '--trace-compile',
-        -- vim.env.HOME .. "/.julia/environments/nvim-lspconfig/tracecompile.jl",
+        '--trace-compile',
+        vim.env.HOME .. "/.julia/environments/nvim-lspconfig/tracecompile.jl",
+        "-t4",
         "-e",
         [[
             # Load LanguageServer.jl: attempt to load from ~/.julia/environments/nvim-lspconfig
@@ -589,13 +696,24 @@ lspconfig.julials.setup {
                     Base.load_path_expand("@v#.#"),
                 ))
             end
+            ENV["JULIA_DEBUG"] = "LanguageServer"
             @info "Running language server" VERSION pwd() project_path depot_path
             server = LanguageServer.LanguageServerInstance(stdin, stdout, project_path, depot_path)
             server.runlinter = true
             run(server)
         ]] }
 }
+-- JETLS
+require 'lspconfig.server_configurations.jetls'
+lspconfig.jetls.setup {
+    on_attach = function(client, bufnr)
+        on_attach(client, bufnr)
+        vim.lsp.inlay_hint.enable(true, { bufnr = bufnr })
+    end,
+    capabilities = capabilities,
+}
 -- SATySFi
+require 'lspconfig.server_configurations.satysfi_ls'
 lspconfig.satysfi_ls.setup {
     on_attach = on_attach,
     capabilities = capabilities,
@@ -607,36 +725,45 @@ lspconfig.bashls.setup {
     capabilities = capabilities,
 }
 -- pwsh
+local win_pwsh_es_path = '~/scoop/apps/powershell-editorservice/current'
+local arch_pwsh_es_path = "/opt/powershell-editor-services/"
 lspconfig.powershell_es.setup {
-    bundle_path = '~/scoop/apps/powershell-editorservice/current',
+    bundle_path = vim.fn.has('win32') == 1 and win_pwsh_es_path or arch_pwsh_es_path,
     capabilities = capabilities,
 }
--- ccls
--- -- csharp
--- lspconfig.omnisharp.setup {
---     cmd = {'omnisharp'},
--- }
 
-lspconfig.typst_lsp.setup {
+
+lspconfig.tinymist.setup {
     on_attach = on_attach,
     capabilities = capabilities,
     single_file_support = true,
+    -- offset_encoding = "utf-8",
+    settings = {
+        formatterMode = "typstyle",
+    },
 }
 
 lspconfig.rust_analyzer.setup {
-    on_attach = on_attach,
+    on_attach = function(client, bufnr)
+        on_attach(client, bufnr)
+        vim.lsp.inlay_hint.enable(true, { bufnr = bufnr })
+    end,
     capabilities = capabilities,
     settings = {
         ['rust-analyzer'] = {
+            cargo = {
+                features = "all",
+            },
             check = {
                 command = "clippy",
-            }
-        }
-    }
+            },
+        },
+    },
 }
 
-local lss = { "pyright", "texlab", "ccls", "clangd", "tsserver", --[["tailwindcss"]] "hls", "cmake",
-    "csharp_ls", "html", "r_language_server", "ruff_lsp", "cssls", "jsonls", "sqls" }
+local lss = { "pyright", "texlab", --[[ "ccls", ]] "clangd", "ts_ls", --[["tailwindcss"]] "hls", "cmake",
+    "csharp_ls", "html", "r_language_server", "cssls", "jsonls", "sqls", "vhdl_ls", "ruff", "lemminx", "nixd", "nil_ls",
+    "verible", "svls", "yamlls" }
 for _, ls in pairs(lss) do
     lspconfig[ls].setup {
         on_attach = on_attach,

dotfiles/neovim/lua/lsp_config.lua

@@ -0,0 +1,37 @@
+local M = {}
+
+---Add `desc` to bufopts table.
+---@param bufopts vim.keymap.set.Opts
+---@param desc string
+---@return vim.keymap.set.Opts
+local function with_desc(bufopts, desc)
+    return vim.tbl_extend("error", bufopts, { desc = desc })
+end
+
+M.on_attach = function(client, bufnr)
+    -- Enable completion triggered by <c-x><c-o>
+    --vim.api.nvim_buf_set_option(bufnr, 'omnifunc', 'v:lua.vim.lsp.omnifunc')
+
+    -- Mappings
+    -- See `:help vim.lsp.*` for documentation on any of the below function
+    local bufopts = { noremap = true, silent = true, buffer = bufnr }
+    vim.keymap.set('n', 'gD', vim.lsp.buf.declaration, with_desc(bufopts, "goto declaration"))
+    vim.keymap.set('n', 'gd', vim.lsp.buf.definition, with_desc(bufopts, "goto definition"))
+    vim.keymap.set('n', 'gT', vim.lsp.buf.type_definition, with_desc(bufopts, "goto type definition"))
+    vim.keymap.set('n', 'K', vim.lsp.buf.hover, with_desc(bufopts, "lsp hover"))
+    vim.keymap.set('n', 'g1', vim.lsp.buf.implementation, with_desc(bufopts, "lsp implementations"))
+    vim.keymap.set('n', '<C-k>', vim.lsp.buf.signature_help, with_desc(bufopts, "lsp signature help"))
+    vim.keymap.set('n', '<space>wa', vim.lsp.buf.add_workspace_folder, with_desc(bufopts, "lsp add_workspace_folder"))
+    vim.keymap.set('n', '<space>wr', vim.lsp.buf.remove_workspace_folder,
+        with_desc(bufopts, "lsp remove_workspace_folder"))
+    vim.keymap.set('n', '<space>wl', function()
+        print(vim.inspect(vim.lsp.buf.list_workspace_folders()))
+    end, with_desc(bufopts, "lsp list_workspace_folders"))
+    vim.keymap.set('n', '<space>D', vim.lsp.buf.type_definition, with_desc(bufopts, "lsp type definition"))
+    vim.keymap.set('n', '<space>rn', vim.lsp.buf.rename, with_desc(bufopts, "lsp rename"))
+    vim.keymap.set('n', '<space>ca', vim.lsp.buf.code_action, with_desc(bufopts, "lsp code_action"))
+    vim.keymap.set('n', 'grf', vim.lsp.buf.references, with_desc(bufopts, "lsp references"))
+    vim.keymap.set('n', '<space>f', function() vim.lsp.buf.format { async = true } end, with_desc(bufopts, "lsp format"))
+end
+
+return M

dotfiles/neovim/lua/lspconfig/server_configurations/jetls.lua

@@ -0,0 +1,37 @@
+local configs = require 'lspconfig.configs'
+local util = require 'lspconfig.util'
+
+local root_files = { 'Project.toml', 'JuliaProject.toml' }
+
+configs.jetls = {
+    default_config = {
+        cmd = {
+            'julia',
+            '+beta',
+            '--project=' .. vim.env.HOME .. '/work/julia/JETLS.jl',
+            '--startup-file=no',
+            '--history-file=no',
+            '-e',
+            [[
+                using JETLS
+                runserver(stdin, stdout)
+            ]]
+        },
+        filetypes = { 'julia' },
+        root_dir = function(fname)
+            return util.root_pattern(unpack(root_files))(fname)
+                or vim.fs.dirname(vim.fs.find('.git', { path = fname, upward = true, })[1])
+        end,
+        single_file_support = true,
+    },
+    commands = {
+        -- JuliaActivateEnv = {
+        --     activate_env
+        -- }
+    },
+    docs = {
+        description = [[
+JETLS: https://github.com/aviatesk/JETLS.jl
+        ]],
+    },
+}

dotfiles/neovim/lua/lspconfig/server_configurations/satysfi_ls.lua

@@ -1,21 +1,20 @@
 -- https://zenn.dev/monaqa/articles/2021-12-10-satysfi-language-server
-local util = require 'lspconfig.util'
+local configs = require 'lspconfig.configs'
 
-return {
-  default_config = {
-    cmd = { 'satysfi-language-server' },
-    filetypes = { 'satysfi' },
-    root_dir = util.root_pattern('.git'),
-    single_file_support = true,
-  },
-  docs = {
-    description = [[
-      https://github.com/monaqa/satysfi-language-server
-      Language server for SATySFi.
-      ]],
+configs.satysfi_ls = {
     default_config = {
-      root_dir = [[root_pattern(".git")]],
+        cmd = { 'satysfi-language-server' },
+        filetypes = { 'satysfi' },
+        root_dir = vim.fs.root(0, ".git"),
+        single_file_support = true,
+    },
+    docs = {
+        description = [[
+        https://github.com/monaqa/satysfi-language-server
+        Language server for SATySFi.
+        ]],
+        default_config = {
+            root_dir = [[root_pattern(".git")]],
+        },
     },
-  },
 }
-

dotfiles/neovim/lua/lualine_setup.lua

@@ -1,7 +1,7 @@
 -- https://qiita.com/uhooi/items/99aeff822d4870a8e269
 local lsp_names = function ()
     local clients = {}
-    for _, client in ipairs(vim.lsp.get_active_clients({ bufnr = 0})) do
+    for _, client in ipairs(vim.lsp.get_clients({ bufnr = 0})) do
         table.insert(clients, client.name)
     end
     return ' ' .. table.concat(clients, ', ')

dotfiles/neovim/lua/pluto_nvim.lua

@@ -1,230 +0,0 @@
-local job = require('plenary.job')
-local M = {}
-
-local NOTEBOOK_HEADER = "### A Pluto.jl notebook ###"
-local BLOCK_START = "# ╔═╡ "
-local CELLORDER_START = "# ╔═╡ Cell order:"
-local CELLORDER_VISIBLE_BODY = "# ╠═"
-local CELLORDER_HIDDEN_BODY = "# ╟─"
-
-local function node_is_pluto_prefix(node)
-    if node:type() ~= "line_comment" then
-        return false
-    end
-    local row, col, _ = node:start()
-    local comment_text = vim.api.nvim_buf_get_lines(0, row, row + 1, true)
-    -- print("TEXT: ", comment_text[1])
-    return nil ~= string.match(comment_text[1], BLOCK_START) and nil == string.match(comment_text[1], CELLORDER_START)
-end
-
----Get iterator of TSnodes of cell prefix comments
----@return function
-function M.get_cell_prefix_nodes()
-    local curnode = vim.treesitter.get_node()
-    local top_nodes = curnode:root():iter_children()
-    return function()
-        while true do
-            local node = top_nodes()
-            if node == nil then
-                return nil
-            end
-            if node_is_pluto_prefix(node) then
-                return node
-            end
-        end
-    end
-end
-
-local function node_is_cell_order(node)
-    if node:type() ~= "line_comment" then
-        return false
-    end
-    local row, col, _ = node:start()
-    local comment_text = vim.api.nvim_buf_get_lines(0, row, row + 1, true)
-    -- print("TEXT: ", comment_text[1])
-    return nil ~= string.match(comment_text[1], CELLORDER_START) or
-        nil ~= string.match(comment_text[1], CELLORDER_VISIBLE_BODY) or
-        nil ~= string.match(comment_text[1], CELLORDER_HIDDEN_BODY)
-end
-
-function M.get_cell_order_nodes()
-    local curnode = vim.treesitter.get_node()
-    local top_nodes = curnode:root():iter_children()
-    return function()
-        while true do
-            local node = top_nodes()
-            if node == nil then
-                return nil
-            end
-            if node_is_cell_order(node) then
-                return node
-            end
-        end
-    end
-end
-
----Get prefix TSNode of current cell
----@return TSNode?
-local function get_current_cell_prefix_node()
-    local curnode = vim.treesitter.get_node()
-    if curnode == nil then
-        print("Not in a cell")
-        return nil
-    end
-    while curnode:parent():type() ~= "source_file" do
-        print("curnode", curnode:range())
-        curnode = curnode:parent()
-    end
-    local prefix_node
-    if node_is_pluto_prefix(curnode) then
-        prefix_node = curnode
-    elseif curnode:prev_sibling() ~= nil and node_is_pluto_prefix(curnode:prev_sibling()) then
-        prefix_node = curnode:prev_sibling()
-    else
-        print("Not a valid cell")
-        print("current node", curnode:type(), curnode:range())
-        return nil
-    end
-    return prefix_node
-end
-
-local function get_uuid(node)
-    local row, col, _ = node:start()
-    local comment_text = vim.api.nvim_buf_get_lines(0, row, row + 1, true)
-    -- print("text", comment_text[1])
-    local _, _, uuid = string.find(comment_text[1], "(%x+-%x+-%x+-%x+-%x+)")
-    return uuid
-end
-
----Get uuid of the current cell.
----@return string?
-function M.get_current_cell_uuid()
-    local prefix_node = get_current_cell_prefix_node()
-    if prefix_node == nil then return nil end
-    return get_uuid(prefix_node)
-end
-
-local function get_cellbody_node(uuid)
-    for node in M.get_cell_prefix_nodes() do
-        if uuid == get_uuid(node) then
-            return node
-        end
-    end
-end
-
----Generate uuid1 using Julia.
----@return string
-local function uuid1()
-    local generated
-    job:new({
-        command = "julia",
-        args = { "-e", "using UUIDs; print(uuid1())" },
-        on_exit = function(j, return_val)
-            if return_val ~= 0 then
-                print("error processing UUID", return_val, vim.inspect(j:result()))
-            end
-            generated = j:result()[1]
-        end,
-    }):sync()
-    return generated
-end
-
----Get row number of the cell order entry which corresponds to the current cell
----@param curuuid string
----@return integer?
-local function get_cell_order_node(curuuid)
-    local ordernode_row
-    for ordernode in M.get_cell_order_nodes() do
-        local srow, scol, erow, ecol = ordernode:range()
-        local str = vim.api.nvim_buf_get_text(0, srow, scol, erow, ecol, {})
-        local _, _, ordernode_uuid = string.find(str[1], "(%x+-%x+-%x+-%x+-%x+)")
-        if ordernode_uuid == curuuid then
-            -- print("Matched: ", curuuid, srow, erow)
-            ordernode_row = srow
-        end
-    end
-    return ordernode_row
-end
-
-function M.insert_cell_below()
-    local curuuid = M.get_current_cell_uuid()
-    if curuuid == nil then
-        return nil
-    end
-    local newuuid = uuid1()
-    local ordernode_row = get_cell_order_node(curuuid)
-    vim.api.nvim_buf_set_lines(0, ordernode_row + 1, ordernode_row + 1, true, {
-        CELLORDER_VISIBLE_BODY .. newuuid
-    })
-    local prefix_node = get_current_cell_prefix_node()
-    if prefix_node == nil then
-        return nil
-    end
-    local _, _, end_row, _ = prefix_node:next_sibling():range()
-    vim.api.nvim_buf_set_lines(0, end_row + 1, end_row + 1, true, {
-        "",
-        BLOCK_START .. newuuid,
-        "",
-    })
-    vim.api.nvim_win_set_cursor(0, { end_row + 4, 0 })
-end
-
-function M.goto_cellorder_entry()
-    local curuuid = M.get_current_cell_uuid()
-    if not curuuid then return nil end
-    local ordernode_row = get_cell_order_node(curuuid)
-    vim.cmd("norm! m`")
-    vim.api.nvim_win_set_cursor(0, { ordernode_row + 1, 0 })
-end
-
-function M.goto_cell_body()
-    local line_str = vim.api.nvim_get_current_line()
-    local _, _, uuid = string.find(line_str, "(%x+-%x+-%x+-%x+-%x+)")
-    if uuid == nil then
-        print("This line doesn't have valid id")
-        return nil
-    end
-    local body_node = get_cellbody_node(uuid)
-    local start_row, _, _, _ = body_node:range()
-    vim.cmd("norm! m`")
-    vim.api.nvim_win_set_cursor(0, { start_row + 2, 0 })
-end
-
-function M.toggle_visibility()
-    local curuuid = M.get_current_cell_uuid()
-    if not curuuid then return nil end
-    local ordernode_row = get_cell_order_node(curuuid)
-    local ordernode_text = vim.api.nvim_buf_get_lines(0, ordernode_row, ordernode_row + 1, true)[1]
-    if string.find(ordernode_text, CELLORDER_VISIBLE_BODY) then
-        vim.api.nvim_buf_set_text(0, ordernode_row, 0, ordernode_row, 4, { CELLORDER_HIDDEN_BODY })
-    elseif string.find(ordernode_text, CELLORDER_HIDDEN_BODY) then
-        vim.api.nvim_buf_set_text(0, ordernode_row, 0, ordernode_row, 4, { CELLORDER_VISIBLE_BODY })
-    end
-end
-
-function M.setup(opts)
-    vim.api.nvim_create_user_command('PlutoGoToCellOrder', M.goto_cellorder_entry, {
-        nargs = 0,
-        desc = "Go to the cell order entry which corresponds to the current cell",
-    })
-    vim.api.nvim_create_user_command('PlutoGoToCellBody', M.goto_cell_body, {
-        nargs = 0,
-        desc = "Go to the cell body which corresponds to the current order entry",
-    })
-    vim.api.nvim_create_user_command('PlutoToggleVisibility', M.toggle_visibility, {
-        nargs = 0,
-        desc = "Toggle visiblity of the current cell",
-    })
-    -- require('nvim-treesitter.configs').setup {
-    --     textobjects = {
-    --         select = {
-    --             enable = true,
-    --             keymaps = {
-    --                 ["ac"] = "@cell.outer",
-    --             },
-    --         },
-    --     },
-    -- }
-end
-
-return M

dotfiles/pwsh/powershell_profile.ps1

@@ -139,7 +139,7 @@ function Enable-SshAgent {
   .OUTPUTS
     no outputs
   #>
-	sudo Set-Service -Name ssh-agent -StartupType Manual && Start-Service ssh-agent
+	sudo run pwsh -c "Set-Service -Name ssh-agent -StartupType Manual && Start-Service ssh-agent"
 }
 # auto start ssh-agent and do ssh-add
 function Invoke-SshAdd {
@@ -164,6 +164,8 @@ $env:LESS = "-i -M -R -S -W -z-4 -x4"
 $env:JL_SYSIMG_PATH = "$HOME/dotfiles/julia-sysimages"
 $env:JL_SYSIMG_PLT = "$HOME/dotfiles/julia-sysimages/sys-plotsmakie.so"
 $env:JL_SYSIMG_ETC = "$HOME/dotfiles/julia-sysimages/sys-etc.so"
+# yazi file
+$env:YAZI_FILE_ONE = "C:\Program Files\Git\usr\bin\file.exe"
 
 
 # ==============================================================
@@ -231,7 +233,3 @@ Import-Module WSLTabCompletion
 
 Get-ChildItem ~\.config\powershell\completions\ | % { . $_ }
 
-# Automatically appended by pdm scoop package
-Get-ChildItem "$PROFILE\..\Completions\" | ForEach-Object {
-    . $_.FullName
-}

dotfiles/startup_linux.jl

@@ -1,6 +1,8 @@
 try
     using OhMyREPL
     enable_autocomplete_brackets(false)
+    include("catppuccin.jl")
+    OhMyREPL.colorscheme!("CatppuccinMocha")
 catch e
     @warn "Failed to load OhMyREPL"
 end

dotfiles/tmux.conf

@@ -2,7 +2,7 @@
 
 source ~/.local.tmux.conf
 # -----------------------------------------------
-set -g history-limit 500000
+set -g history-limit 50000
 
 set-option -g default-command fish
 

dotfiles/wezterm/wezterm.lua

@@ -45,14 +45,17 @@ return {
     --    },
 
     color_scheme = "iceberg-dark",
+    -- color_scheme = "catppuccin-macchiato",
+    -- color_scheme = "catppuccin-latte",
+    -- color_scheme = "Everforest Dark (Gogh)",
     use_fancy_tab_bar = false,
     tab_bar_at_bottom = true,
-    window_background_opacity = 0.85,
+    window_background_opacity = 0.90,
     -- font = wezterm.font 'FirgeNerd Console'
     font = wezterm.font_with_fallback {
         {
-            family = 'JuiseeHW Nerd Font',
-            weight = 'Bold',
+            family = 'Juisee HWNF',
+            weight = 'Regular',
             harfbuzz_features = {
                 'calt=0', -- disables ligature
                 'zero=1',

extra_configs/qpdfview/update_config.py

@@ -0,0 +1,75 @@
+#!/usr/bin/env python
+"""
+Modify qpdfview config.
+"""
+
+import configparser
+import os
+import shutil
+
+# =======================================================================================
+
+QPDFVIEW_CONFIGDIR = os.path.expanduser("~/.config/qpdfview/")
+if not os.path.exists(QPDFVIEW_CONFIGDIR):
+    print("qpdfview config directory not found.")
+    print("Install qpdfview first and rerun this script.")
+    print("Exiting...")
+    exit(1)
+
+# =======================================================================================
+
+QPDFVIEW_CONFIG_CONFIG = QPDFVIEW_CONFIGDIR + "qpdfview.conf"
+print(f"{QPDFVIEW_CONFIG_CONFIG=}")
+
+if os.path.exists(QPDFVIEW_CONFIG_CONFIG):
+    shutil.copyfile(QPDFVIEW_CONFIG_CONFIG, QPDFVIEW_CONFIG_CONFIG + ".orig")
+
+config = configparser.RawConfigParser()
+config.optionxform = lambda optionstr: optionstr
+config.read(QPDFVIEW_CONFIG_CONFIG)
+
+config["documentView"]["autoRefresh"] = "true"
+config["documentView"]["highlightAll"] = "true"
+config["documentView"]["highlightCurrentThumbnail"] = "true"
+config["documentView"]["highlightDuration"] = "5000"
+config["documentView"]["limitThumbnailsToResults"] = "true"
+config["documentView"]["prefetch"] = "true"
+config["documentView"]["prefetchDistance"] = "5"
+config["documentView"]["relativeJumps"] = "true"
+
+config["mainWindow"]["recentlyClosedCount"] = "20"
+config["mainWindow"]["recentlyUsedCount"] = "40"
+config["mainWindow"]["restorePerFileSettings"] = "true"
+config["mainWindow"]["restoreTabs"] = "true"
+config["mainWindow"]["searchableMenus"] = "true"
+config["mainWindow"]["tabVisibility"] = "0"
+config["mainWindow"]["trackRecentlyUsed"] = "true"
+config["mainWindow"]["viewToolBar"] = "scaleFactor, zoomIn, zoomOut, fitToPageWidthMode"
+
+config["pageItem"]["cacheSize"] = "131072K"
+
+with open(QPDFVIEW_CONFIG_CONFIG, "w") as file:
+    config.write(file, space_around_delimiters=False)
+
+# =======================================================================================
+
+QPDFVIEW_CONFIG_SHORTCUTS = QPDFVIEW_CONFIGDIR + "shortcuts.conf"
+
+if os.path.exists(QPDFVIEW_CONFIG_SHORTCUTS):
+    shutil.copyfile(QPDFVIEW_CONFIG_SHORTCUTS, QPDFVIEW_CONFIG_SHORTCUTS + ".orig")
+
+shortcut_config = configparser.RawConfigParser()
+shortcut_config.optionxform = lambda optionstr: optionstr
+shortcut_config.read(QPDFVIEW_CONFIG_SHORTCUTS)
+
+shortcut_config["General"]["continuousMode"] = "Ctrl+7, C"
+shortcut_config["General"]["findNext"] = "Ctrl+G, Return"
+shortcut_config["General"]["findPrevious"] = "Ctrl+Shift+G, Shift+Return"
+shortcut_config["General"]["jumpToPage"] = "Ctrl+J, G"
+shortcut_config["General"]["nextPage"] = "Space, N"
+shortcut_config["General"]["previousPage"] = "Backspace, P"
+shortcut_config["General"]["zoomIn"] = "Ctrl+Up, Ctrl++"
+shortcut_config["General"]["zoomOut"] = "Ctrl+Down, Ctrl+-"
+
+with open(QPDFVIEW_CONFIG_SHORTCUTS, "w") as file:
+    shortcut_config.write(file, space_around_delimiters=False)

extra_configs/xremap_config.yml

@@ -16,6 +16,9 @@ modmap:
       Win_L:
         held: Win_L
         alone: Key_Chat
+  - name: left shift
+    remap:
+      Capslock: shift_l
 keymap:
   - name: ZenkakuHankaku to Esc
     remap:

extra_configs/xremap_mouse_config.yml

@@ -0,0 +1,15 @@
+keymap:
+  - name: Wheel Tilt
+    remap:
+      # Side forward
+      # Btn_Side: Left
+      # Side back
+      # Btn_Extra: Right
+      XRIGHTSCROLL:
+        remap:
+          XHIRES_RIGHTSCROLL: Ctrl-Tab
+      XLEFTSCROLL:
+        remap:
+          XHIRES_LEFTSCROLL: Ctrl-Shift-Tab
+    device:
+      only: 'Logi M750 Mouse'

julia-sysimages

@@ -1 +1 @@
-Subproject commit 21f32a2032614d2e923be436ca4a4f0f07a8cdc5
+Subproject commit 4661893b2a71e30ee13197ff4fa6291d85d1a012

nix/README.md

@@ -0,0 +1,14 @@
+# Experimental Nix flake for general cli environment
+- Basically for servers, not for my laptops.
+
+# How to Install
+```sh
+$ nix flake build
+$ nix profile install .#my-packages
+```
+
+# How to upgrade
+```sh
+$ nix flake upgrade
+$ nix profile upgrade my-packages
+```

nix/flake.lock

@@ -0,0 +1,27 @@
+{
+  "nodes": {
+    "nixpkgs": {
+      "locked": {
+        "lastModified": 1745391562,
+        "narHash": "sha256-sPwcCYuiEopaafePqlG826tBhctuJsLx/mhKKM5Fmjo=",
+        "owner": "nixos",
+        "repo": "nixpkgs",
+        "rev": "8a2f738d9d1f1d986b5a4cd2fd2061a7127237d7",
+        "type": "github"
+      },
+      "original": {
+        "owner": "nixos",
+        "ref": "nixos-unstable",
+        "repo": "nixpkgs",
+        "type": "github"
+      }
+    },
+    "root": {
+      "inputs": {
+        "nixpkgs": "nixpkgs"
+      }
+    }
+  },
+  "root": "root",
+  "version": 7
+}

nix/flake.nix

@@ -0,0 +1,33 @@
+{
+  description = "A very basic flake";
+
+  inputs = {
+    nixpkgs.url = "github:nixos/nixpkgs?ref=nixos-unstable";
+  };
+
+  outputs = { self, nixpkgs }: {
+
+    packages.x86_64-linux.my-packages = nixpkgs.legacyPackages.x86_64-linux.buildEnv {
+      name = "my-packages-list";
+      paths = [
+        nixpkgs.legacyPackages.x86_64-linux.fish
+        nixpkgs.legacyPackages.x86_64-linux.git
+        nixpkgs.legacyPackages.x86_64-linux.curl
+        nixpkgs.legacyPackages.x86_64-linux.neovim
+        nixpkgs.legacyPackages.x86_64-linux.ripgrep
+        nixpkgs.legacyPackages.x86_64-linux.bat
+        nixpkgs.legacyPackages.x86_64-linux.eza
+        nixpkgs.legacyPackages.x86_64-linux.zoxide
+        nixpkgs.legacyPackages.x86_64-linux.yazi
+        nixpkgs.legacyPackages.x86_64-linux.hexyl
+        nixpkgs.legacyPackages.x86_64-linux.fzf
+        nixpkgs.legacyPackages.x86_64-linux.difftastic
+        nixpkgs.legacyPackages.x86_64-linux.starship
+        nixpkgs.legacyPackages.x86_64-linux.lazygit
+
+        nixpkgs.legacyPackages.x86_64-linux.clang-tools
+      ];
+    };
+  };
+}
+