From bf19ee3167c589f57304628e56616c35095f7444 Mon Sep 17 00:00:00 2001 From: Wataru Otsubo Date: Tue, 1 Oct 2024 11:24:44 +0200 Subject: [PATCH] [new] Slave clock parser and function to insert into database --- CHANGELOG.md | 5 +- docs/src/about_software.md | 14 + src/PSBoardDataBase.jl | 7 +- src/import_data.jl | 40 + src/parse_clock.jl | 46 + src/sql/create_table.sql | 3 +- test/input/.gitignore | 3 + test/input/slavelogs/main/230_51_clk.txt | 1401 +++++++++++++++++++++ test/input/slavelogs/main/448_103_clk.txt | 337 +++++ test/runtests.jl | 8 + 10 files changed, 1861 insertions(+), 3 deletions(-) create mode 100644 src/parse_clock.jl create mode 100644 test/input/slavelogs/main/230_51_clk.txt create mode 100644 test/input/slavelogs/main/448_103_clk.txt diff --git a/CHANGELOG.md b/CHANGELOG.md index 10cebc6..0c779ff 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -10,13 +10,16 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ### Added - Add `versions` table to store version information of converter(this software) -- Add `skew` columnt to `qaqc_positions` table +- Add `skew` column to `qaqc_positions` table - Add `DownloadCSVs` module and functions which downloads the latest CSVs from Google sheets +- Add `ClockParser` module and `get_skew` function +- Add `lvds_tx_skew` column to `qaqc_single_run_result` table and related functions in `import_data.jl` ### Changed - Set download functions in `DownloadCSVs` as default CSV locations in `create_database_from_exported_csvs` - Replaced CSV files used in test to newly add `DownloadCSVs` functions +- `create_database_from_exported_csvs` now requires `slavelog_dir` to get skew from slave logs ### Deleted diff --git a/docs/src/about_software.md b/docs/src/about_software.md index 97eef52..6bfed3e 100644 --- a/docs/src/about_software.md +++ b/docs/src/about_software.md @@ -1,6 +1,14 @@ ```@meta CurrentModule = PSBoardDataBase ``` + +# Index + +```@contents +Pages = ["about_software.md"] +Depth = 4 +``` + # このリポジトリのソフトウェアについての説明 このリポジトリにあるのは、JATHub masterのログファイル、及びGoogle SheetsからエクスポートしたCSVファイルからデータベースを作成するためのコードである。 @@ -81,3 +89,9 @@ Modules = [QaqcMasterLog] ```@autodocs Modules = [DownloadCSVs] ``` + +## `ClockParser` + +```@autodocs +Modules = [ClockParser] +``` diff --git a/src/PSBoardDataBase.jl b/src/PSBoardDataBase.jl index a000e9e..223da36 100644 --- a/src/PSBoardDataBase.jl +++ b/src/PSBoardDataBase.jl @@ -8,6 +8,7 @@ using DataFrames using Dates include("parse_qaqc_master_log.jl") +include("parse_clock.jl") include("create_table.jl") include("download_csv.jl") @@ -22,6 +23,7 @@ include("import_data.jl") hundred_csv::AbstractString = DownloadCSVs.download_hundred_run_csv(), jathubs_csv::AbstractString = DownloadCSVs.download_jathub_csv(), masterlog_dir::AbstractString, + slavelog_dir::AbstractString, ) Create database at `dbpath` and import data from CSV and master log files. @@ -33,7 +35,8 @@ Create database at `dbpath` and import data from CSV and master log files. - `dispatch_csv`: CSV of dispatch lists exported from the Google sheets database - `hundred_csv`: CSV of 100 tests results exported from the Google sheets database - `jathubs_csv`: CSV for jathub list used in QAQC. Used to add skew. -- `masterlog_dir`: path to the directory (`log`) where all JATHub master log is stored +- `masterlog_dir`: path to the directory (`log`) where all JATHub master logs are stored +- `slavelog_dir`: path to the directory where all JATHub slave logs are stored """ function create_database_from_exported_csvs( dbpath::AbstractString; @@ -43,6 +46,7 @@ function create_database_from_exported_csvs( hundred_csv::AbstractString = DownloadCSVs.download_hundred_run_csv(), jathubs_csv::AbstractString = DownloadCSVs.download_jathub_csv(), masterlog_dir::AbstractString, + slavelog_dir::AbstractString, ) db = create_database(dbpath) single_result_df = CSV.read(single_run_csv, DataFrame) @@ -59,6 +63,7 @@ function create_database_from_exported_csvs( add_qaqc_dispatch(db, dispatch_table) add_qaqc_runlist_from_masterlogs(db, masterlog_dir) add_qaqc_100test_result(db, extra_100test_result_df) + add_skew_from_slave_clk_logs(db, slavelog_dir) db end diff --git a/src/import_data.jl b/src/import_data.jl index 87040c6..e29c255 100644 --- a/src/import_data.jl +++ b/src/import_data.jl @@ -702,3 +702,43 @@ function add_qaqc_100test_result(db::SQLite.DB, table::DataFrame) nothing end + +""" + add_skew_from_slave_clk_logs(db::SQLite.DB, logs_dir::AbstractString) + +Insert skew measurement result from slave logs with name `psbid_runid_clk.txt`. +See [`ClockParser.get_skew`](@ref) for parse detail. + +# Abnormal logs: +- `48_nagoya_irradition_...`: skipped +""" +function add_skew_from_slave_clk_logs(db::SQLite.DB, logs_dir::AbstractString) + stmt_insrt = DBInterface.prepare( + db, + sql""" + UPDATE qaqc_single_run_results + SET lvds_tx_skew = :skew + WHERE runid = :runid AND psboard_id = :psbid + """, + ) + clk_files = + readdir("$logs_dir/main", join = true) |> + filter(endswith("_clk.txt")) |> + filter(!contains("nagoya")) + + DBInterface.transaction(db) do + for file in clk_files + m = match(r"^(?\d+)_(?\d+)_clk.txt$", splitdir(file) |> last) + if isnothing(m) + error("Invalid filename $(file)") + end + + DBInterface.execute( + stmt_insrt, + (skew = ClockParser.get_skew(file), runid = m[:runid], psbid = m[:psbid]), + ) + end + end + + nothing +end diff --git a/src/parse_clock.jl b/src/parse_clock.jl new file mode 100644 index 0000000..a8a5955 --- /dev/null +++ b/src/parse_clock.jl @@ -0,0 +1,46 @@ +module ClockParser + +export get_skew + +function _parse_line(line::AbstractString) + time, high, _ = split(line) + parse(Float64, time), parse(Float64, high) +end + +""" + get_skew(file::T) where {T <: AbstractString} -> Union{Float64, Missing} + +Get skew from clock result file `file`. +It returns `missing` for invalid files. +To see the detailed reason, increase log level to `DEBUG`. +Invalid cases are: + +- first line has >0 counts => "Unexpected first line" +- no measurement has >500 counts => "Clock skew out of range" +""" +function get_skew(file::T) where {T <: AbstractString} + lines = Iterators.Stateful(eachline(file)) + + first_line = popfirst!(lines) + # criteria: https://gitlab.cern.ch/dhashimo/PS_Board_QAQC/-/blob/master/Software_Test/project_auto_reset/QAQC_test_func.cxx?ref_type=heads#L208 + let + time, high = _parse_line(first_line) + if high > 0 + @debug "Unexpected first line" file + return missing + elseif high > 500 + return time + end + end + + time_and_counts = Iterators.map(_parse_line, lines) + for (time, high) in time_and_counts + if high > 500 + return time + end + end + @debug "Clock skew out of range" + return missing +end + +end # module ClockParser diff --git a/src/sql/create_table.sql b/src/sql/create_table.sql index c820a55..97fe4ab 100644 --- a/src/sql/create_table.sql +++ b/src/sql/create_table.sql @@ -21,6 +21,7 @@ CREATE TABLE qaqc_single_run_results ( asdtp INTEGER, reset INTEGER, qaqc_result INTEGER, + lvds_tx_skew REAL, note TEXT, FOREIGN KEY("runid") REFERENCES "qaqc_runs"("id"), FOREIGN KEY("psboard_id") REFERENCES "ps_boards"("id"), @@ -114,8 +115,8 @@ AS qaqc_single_run_results.asdtp, qaqc_single_run_results.reset, qaqc_single_run_results.qaqc_result, + qaqc_single_run_results.lvds_tx_skew - qaqc_positions.rising_ns AS lvds_tx_skew, qaqc_runs.shiftscript_ver, - qaqc_runs.shifter, qaqc_single_run_results.note AS result_note FROM ps_boards, diff --git a/test/input/.gitignore b/test/input/.gitignore index e74f2f2..5e74d62 100644 --- a/test/input/.gitignore +++ b/test/input/.gitignore @@ -1,2 +1,5 @@ log/* +slavelogs/main/* !log/57_long.log +!slavelogs/main/230_51_clk.txt +!slavelogs/main/448_103_clk.txt diff --git a/test/input/slavelogs/main/230_51_clk.txt b/test/input/slavelogs/main/230_51_clk.txt new file mode 100644 index 0000000..45c5ebc --- /dev/null +++ b/test/input/slavelogs/main/230_51_clk.txt @@ -0,0 +1,1401 @@ +0.000000000000000 1000.000000 0.000000 +0.017857142857143 1000.000000 0.000000 +0.035714285714286 1000.000000 0.000000 +0.053571428571429 1000.000000 0.000000 +0.071428571428571 1000.000000 0.000000 +0.089285714285714 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+15.928571428571429 1000.000000 0.000000 +15.946428571428571 1000.000000 0.000000 +15.964285714285714 1000.000000 0.000000 +15.982142857142858 1000.000000 0.000000 +16.000000000000000 1000.000000 0.000000 diff --git a/test/runtests.jl b/test/runtests.jl index 1ec1141..892440d 100644 --- a/test/runtests.jl +++ b/test/runtests.jl @@ -16,6 +16,11 @@ true || include("../src/PSBoardDataBase.jl") @test masterlog_metadata.shiftscript_version == v"1.0.2" end + @testset "parse clk log" begin + @test PSBoardDataBase.ClockParser.get_skew("input/slavelogs/main/230_51_clk.txt") |> ismissing + @test PSBoardDataBase.ClockParser.get_skew("input/slavelogs/main/448_103_clk.txt") ≈ 12.000000000000000 + end + @testset "Download data csv" begin out = tempname() @test CSV.read( @@ -100,6 +105,9 @@ true || include("../src/PSBoardDataBase.jl") @test PSBoardDataBase.add_qaqc_100test_result(db, extra_100test_result_df) |> isnothing + @test PSBoardDataBase.add_skew_from_slave_clk_logs(db, "input/slavelogs/") |> + isnothing + run(`sqlitebrowser $dbpath`) end end